A collection of simple python tools for molecular biology and bioinformatics
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Updated
May 15, 2023 - Python
Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
A collection of simple python tools for molecular biology and bioinformatics
GenBank DNA files parser with graphic user interface
Research project for the Breaker Lab
Currents scripts and pipeline used for counting GC3 on: 20 Lepidoptera species, 33 Hymenoptera species, 42 Diptera species and 15 Coleoptera species using ensemble DToL data
Small Long-read Assembler for Educational Purposes.
small scripts related to bioinformatics. Moved to my system_config repo.
Exercises and projects developed in bioinformatics classes using python.
A program that generates a word cloud for Dr. Christine Vogel's Systems Biology Wiki page.
Antibiotic Resistance in Metagenomes
Solutions to Rosalind bioinformatics coding challenges (http://rosalind.info/users/karalaina/)
Repository containing all of my solutions to various Rosalind Projects using Python3
Hyperheuristic: Standard Particle Swarm Optimization and Genetic Algorithm
This program leverages zero recombination clusters and their relative positions on a linkage group to impute phases for missing data with high fidelity.
Alignement structurale d'une séquence protéique sur une structure protéique 3D.
scram2_plot: generate profiles and interactive scatter plots from scram2 alignments
Repo for the HISAT2 .ndexer module which creates indices for the HISAT2.aligner module