Comparative Genomics Toolkit 3

anndata with trees

Bystro genetic analysis (annotation, filtering, statistics)

Code for ComplexSorter: A Tool for Sorting GEMs in Different Schemes

Flexible omics pipeline

Progetto analisi dati Covid-19

Open source biolab

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

A Python implementation of the `tximport` package.

Services and guidelines for normalizing genes

Services and guidelines for normalizing drug and other therapy terms

Quality of life improvements for Bioinformatics in Python.

Data Apps & Dashboards for Python. No JavaScript Required.

This repository contains an example implementation of DESeq2 in Python.

Set of standalone APIs built with the BioThings SDK for the Translator Project

💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

Web app and CLI tools for working with biomedical terminologies. https://github.com/orgs/jhu-bids/projects/9/views/7

A short tandem repeat (STR) genotyping and analysis toolkit for long reads

Project metadata manager for PEPs in Python