Reproduce the figures in "The genetic basis for adaptation of model-designed syntrophic co-cultures"

CLI Tool to init new reproducible project with the help of conda and github

KBase SDK module for model analysis apps created and managed by the ModelSEED team

A desktop app, web app and CLI to operate and find vulnerabilities in SBML metabolic networks.

Provide SQLAlchemy ORM and pydantic data models for SQL storage and serialization of COBRA components such as reactions, compounds, and compartments.

Constellab brick for genome-scale metabolic modelling

It's HDWallet Generator for Ethereum blockchain.

COBRA for Classification tasks on Imbalanced Data

GEMsembler tool for assembling and comparing several types of Genome-Scale Metabolic Models (GEMs)

Register Nodes to the ACI Fabric

Code for training and parameter tuning of a machine learning model for non-linear aggregation of image denoising estimators using COBRA combined regression strategy. The face images used for training and testing are taken from the Labelled Faces in the Wild (LFW) dataset.

CoBra software for rockets with RaspberryPi Pico RP2040 chip

Cobra can steal system info of the windows system and then send it to a email of your choice

PyTest plugin for testing smart contracts for Ethereum blockchain.

An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al

A COBRApy extension for genome-scale models of metabolism and expression (ME-models)

Python package for building and analyzing models using ModelSEED

Python package to study microbial communities using metabolic modeling.

COBRApy is a package for constraint-based modeling of metabolic networks.