Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

Recentrifuge: robust comparative analysis and contamination removal for metagenomics

The LM Contamination Index is a manually created database of contamination evidences for LMs.

Rapid and simple taxonomic profiling of genome and metagenome contigs

GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and metadata with focus on contamination detection.

Module and script to remove contamination in assembled genomes before submission to ncbi

Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification

A platform that enables users to perform private benchmarking of machine learning models. The platform facilitates the evaluation of models based on different trust levels between the model owners and the dataset owners.

🗑️🦷 decOM 🦷🗑️

MitoSIS (Mitochondrial Species Identification System) is a wrapper for mitochondrial genome assembly and identification of sample contamination or mislabeling.

cross-contamination of plant virus base on read assignation

Reference-based, heuristic algorithm for identification of potential contaminants in mothur-formatted OTU tables

Simulate the diffusion of contaminants in water networks.