📊 A universal enrichment tool for interpreting omics data

A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.

🧬 gget enables efficient querying of genomic reference databases

A Python library and command-line tool for creating dot-plots for pathways and enrichment analysis.

Visualization of Functional Enrichment Result

Library for KEGG pathway enrichment analysis

An Rpackage to identify cells membrane marker genes from bulkRNA sequencing data

Gene Set Enrichment Analysis in Python

🩺 MeSH Enrichment and Semantic analyses

Reactome Pathway Analysis

😷 Disease Ontology Semantic and Enrichment analysis

This repository contains a collection of tasks and projects assigned to me during my internship. The tasks cover various aspects of my work, including data analysis, code development, and project contributions.

A set of Shiny apps to provide interactive enrichment analysis and exploration of results.

📦 Tools for Manipulating FOBI Ontology

Permutation Enrichment Testing for Binary Data

R wrapper for ermineJ

Function Enrichment analysis and Network construction

This RNAseq data analysis tutorial is created for educational purpose

Multi-Scale Target Explorer systematically identifies, prioritises, and visualises cell-type-specific gene therapy targets across the phenome.