Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.

An efficient FASTQ manipulation suite

FASTQ compression

Command line utility for manipulating Illumina-generated FASTQ files.

👷 Fasten toolkit, for streaming operations on fastq files

Parse and process FASTA and FASTQ formatted files of biological sequences.

A versatile compressor of third generation sequencing reads.

Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)

Fast k-mer based tool for multi locus sequence typing (MLST)

Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.

A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust

ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to amalgamate reads derived from the same DNA template into a consensus sequence.

less like viewer for fastq files

Software for the analysis and visualization of site-saturation mutagenesis experiments

Calculate fastq reads and sequencing coverage

A simple fastp-MultiQC nextflow pipeline

Datastores for reads, not your papa's FASTQ files.

Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point for more complex scripts

Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.

ALAPY COMPRESSOR: FASTQ lossless compressor