SUTD 2020 10.007 Modelling the Systems World 1D Project
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Updated
Jun 6, 2020 - Python
SUTD 2020 10.007 Modelling the Systems World 1D Project
A python code for analyzing photobleaching in fluorescence microscopy from a time series TIF image stack
This repository contains a python code which calculates level populations and fluorescence efficiencies (g-factors) for atoms (or molecules) in the presence of a radiation field (e.g. the solar spectrum).
PyFDAP is a Python-based analysis framework for Fluorescence Decay After Photoconversion (FDAP) experiments.
Fluorescence microscopy deconvolution scripts, using CUDA. DeltaVision and Zeiss Spinning-Disk formats supported.
Python scripts and data analysis templates for the analysis of time-tag time-resolved flourescence (cross-) correlation data acquired in live cell experiments
🏮 Parsing and analysing platereader absorbance and fluorescence data.
Determine transition kinetics from single molecule FRET experiments
This is a repo for a Python based application to open SMS .h5 files, and perform the initial analysis and exporting.
A simple fluorescence microscopy simulation and visualization tool
A suite of command line tools and a web app for plotting and analyzing fluorescence data.
Quantitation of migration of fluorescent spots into regions of interest.
Supplemental resources for the Nellie paper.
Software and data associated with the article titled, "Binding, Brightness, or Noise? Extracting Temperature-dependent Properties of Dye Bound to DNA," Biophys. J. Accepted, (2023). doi:10.1016/j.bpj.2023.03.002
ifpd2: a Python3.7+ package to build iFISH probes
mdtraj_fps ia a command line tool to calculate FRET observables form MD-trajectories
Python library for the preprocessing, correction, deconvolution and analysis of Excitation Emission Matrices (EEMs).
Zebrafish embryo fluorescence quantification
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