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interface-cli

Here are 6 public repositories matching this topic...

Scindices / arq5x--bedtools2

bedtools - the swiss army knife for genome arithmetic

status-active lang-cpp lang-c domain-bioinformatics interface-cli role-application task-file-io status-published status-packaged-conda scope-focused method-statistics entity-nucleic-acid task-sequence-analysis entity-sequence domain-genomics

Updated Jun 10, 2026
C

Scindices / Discngine--fpocket

fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and extract pocket descriptors on a large scale level. fpocket is distributed as free open source software.

status-active lang-c interface-cli role-application domain-structural-biology entity-protein status-published status-packaged-conda scope-focused domain-drug-discovery task-pocket-detection task-binding-site method-physics

Updated Mar 9, 2026
C

Scindices / schrodinger--pymol-open-source

Open-source foundation of the user-sponsored PyMOL molecular visualization system.

Updated Jul 25, 2026
C

Scindices / lh3--bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

status-active task-alignment lang-c domain-bioinformatics interface-cli role-application status-published status-packaged-conda scope-focused method-statistics entity-nucleic-acid entity-sequence domain-genomics

Updated Jul 25, 2026
C

Scindices / samtools--samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

status-active task-alignment lang-c domain-bioinformatics interface-cli role-application task-file-io method-chemoinformatics status-published status-packaged-conda scope-focused method-statistics entity-nucleic-acid entity-sequence domain-genomics

Updated Jul 28, 2026
C

Scindices / lh3--minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

status-active task-alignment lang-c domain-bioinformatics interface-cli role-application status-published status-packaged-conda scope-focused method-statistics entity-nucleic-acid entity-sequence domain-genomics

Updated May 19, 2026
C

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