Fast and accurate de novo assembler for long reads
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Updated
May 10, 2024 - C
Fast and accurate de novo assembler for long reads
PEPPER-Margin-DeepVariant
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Reference-guided transcript discovery and quantification for long read RNA-Seq data
Long read production pipelines
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
A fast tool for hybrid genome assembly of long and short reads
Yet Another Chimeric Read Detector
⛓ Long Interval Nucleotide K-mer Scaffolder
Long-reads Gap-free Chromosome-scale Assembler
ClairS - a deep-learning method for long-read somatic small variant calling
Tandem repeat expansion detection or genotyping from long-read alignments
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
Scalable long read self-correction and assembly polishing with multiple sequence alignment
A versatile compressor of third generation sequencing reads.
SneakySnake:snake: is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.o…
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