Code for systematically classify data in SRA according to all the taxa present in the reads (SRA-metagenome)
-
Updated
Jan 25, 2022 - C++
Code for systematically classify data in SRA according to all the taxa present in the reads (SRA-metagenome)
Fast sequence vectorization for metagenomics analysis. Converts input sequences into k-mer coverage vectors, fast! Read more detail in our paperhttps://doi.org/10.1093/bioinformatics/btaa441
Accurate taxonomic classification and abundance profiling using locality-sensitive hashing.
MetaCache-MPI is a software tool that allows to use the metagenomics minhashing algorithm from metacache by means of a High Performance Computing environment by using the MPI library.
KOMB is a tool for fast identification of unitigs of interest in metagenomes. KOMB introduces the concept of a Hybrid Unitig Graph (an extension to compacted de Bruijn graphs) and relies on k-core and K-truss decomposition algorithms.
fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing
genome sized sequences clustering
QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture
mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!
mGEMS Genomic epidemiology with mixed samples
Fast and space-efficient taxonomic classification of long reads
Fast in-silico normalization algorithm for NGS data
Tools and utilities for running Dockerized metagenomics tools in the Cloud
gargammel is an ancient DNA simulator
Estimate metagenomic coverage and sequence diversity
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
Bonsai: Fast, flexible taxonomic analysis and classification
LAMBDA – the Local Aligner for Massive Biological DatA
Add a description, image, and links to the metagenomics topic page so that developers can more easily learn about it.
To associate your repository with the metagenomics topic, visit your repo's landing page and select "manage topics."