Open source bioinformatics and computational biology toolbox written in F#.
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Updated
May 14, 2024 - F#
Open source bioinformatics and computational biology toolbox written in F#.
Nucleic and amino acid primitive types
MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
Analysis of Sars Cov-2 Gene Mutations using Python Numpy and Matplotlib
Numerical Encoding for Human Genetic Variants
Solidity implementations of well-known pairwise alignment methods such as Needleman-Wunsch's global sequence alignment and the Smith-Waterman local sequence alignment algorithm.
A Python script that for a parameter k, calculates the universal alignment of 2 sequences, with limitation that the alignment contains at most k unknown nucleotides. Nucleotide sequences are sometimes written in a 5-character alphabet, A, T, G, C, and N where N stands for an undefined nucleotide.
Protein to RNA reverse translation
📦 Modstrings: implementation of Biostrings to work with nucleotide sequences containing modified nucleotides.
API repo: https://github.com/shamseen/pngcat-api
GenSkew is an application for computing and plotting nucleotide skew data.
MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data
deep learning experiments on biological sequences with PyTorch
FLiCK - Format LeveragIng Compression frameworK
No longer actively developed...See README
Determine the thermodynamic properties for nucleotide conversions
Used for counting the number of all four nucleotides and finding the percentage number of each of them
This is a web application to count the nucleotides composition in a DNA sequence sample.
Small programs to parse and analyze sequence files. Misc programs
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