Python ETL framework for stream processing, real-time analytics, LLM pipelines, and RAG.

Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

Overrepresentation analysis for KEGG and PID pathways using community detection

Benchmarks for data processing systems: Pathway, Spark, Flink, Kafka Streams

A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.

PKB (Pathway-based Kernel Boosting): use gene expression for classification

DEPRECATED: Integrating topologically associating domains (TADs) to prioritize GWAS signal

Generate Highlighted SVG/PNG for KEGG Pathway

Python implementation of a bipartite directed multigraph extracted from the Reactome biological pathway database.

PKB: use clinical features and gene expression to predict outcomes of interest. Support classification, regression, and survival analysis

[CSE111] 🖥️ Programming with Functions

This repository contains code for a rag application that can be used for summarization and information retrieval from research papers.

This LLM-powered app fetches and summarizes the latest research papers from arXiv based on your chosen domain, making it easier to stay informed.

[UNDER DEVELOPMENT] ExamInsight is a RAG application designed to analyze previous exam question papers and identify common question patterns. This tool aims to help students prepare more effectively for their exams by providing insights into frequently asked questions and topics.

Pathway vs Spark for Streaming Analytics

A movie recommendation app that is used together with Gemini and pathway.

A chatbot to help read and understand bills passed by the Indian govt.

HuberMind AI is an innovative tool inspired by the expertise of neuroscientist Andrew Huberman. Just 'Ask Andrew' anything you want to know, and get intelligent, AI-powered responses.

A highly-configurable, real-time data quality monitoring tool designed for streaming data