pathpy is an OpenSource python package for the modeling and analysis of pathways and temporal networks using higher-order and multi-order graphical models
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Updated
May 2, 2020 - Python
pathpy is an OpenSource python package for the modeling and analysis of pathways and temporal networks using higher-order and multi-order graphical models
Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024
PHOsphoproteomic dissecTiOn using Networks
Harmonizing pathway databases using Biological Expression Language (BEL)
A Bio2BEL package for integrating pathway-related information from KEGG in BEL
Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs
Proof Of Concept - Open Patient Pathway Generator using and an agent based approach
Integration of pathway-related information from Reactome in BEL
Export GO-CAMs to SIF (Python)
Modeling heme pathogenicity and pathway dysregulation in the context of hemolytic disorders
Integration of pathway-related information from WikiPathways in BEL
Testing, development environment for a new project of KN BIBS
Converting KGML encoded KEGG pathways to the SIF file format
Reference implementation of the paper Redundancy-aware unsupervised ranking based on game theory - application to gene enrichment analysis
Converting SBGN-encoded pathways to the SIF file format
Converting SBGN encoded pathways to the SIF file format
Computational tool for prioritizing the genetic candidates based on the protein functional and regulatory features
PathwayNet is a project based on Python and Bioinformatics. It tries to build up mathematic modes on simulating pathways of amino acid synthesis in E. coli.
A Bio2BEL package for converting the Gene Ontology (GO) to BEL
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