rna-seq
Here are 61 public repositories matching this topic...
Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
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Aug 26, 2023 - Shell
🚦 Run Picard on BAM files and collate 90 metrics into one file.
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Sep 27, 2017 - Shell
Nature Medicine paper. A Multidimensional Precision Medicine Approach for Autism Subtype Identification.
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Aug 11, 2020 - Shell
RNA-seq analyses.
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Apr 25, 2024 - Shell
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Jul 10, 2023 - Shell
Cluster-specific pseudo-bulk analysis of 10X single-cell RNA-seq data by connecting Seurat to the VBC RNA-seq pipeline.
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Apr 7, 2020 - Shell
Bioinformatic scripts for working on the UiO Abel compute cluster
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Jun 17, 2020 - Shell
A comprehensive pipeline for Ribo-seq data analysis
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Mar 18, 2024 - Shell
This project consists of various scripts that were used for analysis of RNA-Seq data. The scripts are not customised but basal level which one can use to fit into their suitable experimental design post modifications.
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Jun 29, 2018 - Shell
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Sep 26, 2019 - Shell
🩺 Assessing StringTie, Salmon, and Kallisto with simulated RNA-Seq reads with noises introduced in read- and annotation-level.
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May 1, 2022 - Shell
A script used to calculate percent spliced-in (PSI) values from bulk RNA sequencing data.
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May 27, 2022 - Shell
Machine learning and bioinformatic workflows for gene discovery.
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Aug 9, 2019 - Shell
Preprocessing and differential expression analysis for QuantSeq 3' mRNA-seq data
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May 9, 2023 - Shell
Data and code for RNA-seq analysis workshop in R
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Jan 17, 2022 - Shell
Salmon indexer wrapper module for GenePattern.
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Apr 19, 2022 - Shell
Workshops, Course Schedule and Teaching Assistant Review from my time as a chosen Undergraduate Teaching Assistant for the University of Pittsburgh course, BIOSC1540 - Computational Genomics taught by Dr. Miler Lee.
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Mar 18, 2019 - Shell
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