a pytorch lib with state-of-the-art architectures, pretrained models and real-time updated results

qtop (pronounced queue-top) is a tool written in order to monitor the state of Queueing Systems, along with related information relevant on HPC & grid clusters. At present it supports **PBS, SGE & OAR** families. There is a historic reference for the prior shell version of the tool, at former CERN source:

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

Simple HPC queuing system adapter for Python on based jinja templates to automate the submission script creation.

Module to create DAG Task and Manage Task on SGE

Longbow is a tool for automating simulations on a remote HPC machine. Longbow is designed to mimic the normal way an application is run locally but allows simulations to be sent to powerful machines.

parse Grid Engine qstat job info list into a list of python dicts

Utilities to support interacting with multiple HPC clusters

runjob is a program for managing a group of related jobs running on a compute cluster

xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from next-generation DNA sequencing data.

A simple job manager for PBS (Portable Batch System)

Utility modules for Python

Some scripts for managing nodes and jobs on SGE

A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.

Running cellprofiler on eddie3 / SGE clusters

Execution and management of Docker containers in batch systems.

Simple wrapper for qsub which provides the functionality of the '-sync' option

Proof-of-concept, MPI-based distributed training of a neural network on SGE HPCs.

Tools for parsing sun grid engine logging files

Tool to generate SGE scripts based on an experiment config