Diretório com os algoritmos de pré-processamento e modelos para análise de dados espectrais da uva de mesa Cotton Candy.

Convert output from Samtools pileup into a matrix.

vue app with flask REST api to process genomic data

WES Analysis scripts for "Immune determinants of response to neoadjuvant chemo-radiation in esophageal adenocarcinoma" publication

Python wrapper and web-server for Ensembl VEP

varscan repo contains code for Varscan workflow

analysis of data on neutral single nucleotide polymorphisms

A simple module for diagnostic variant information parsing

Single Nucleotide Variant Filtering

Cell Line Authentication from ChIP-seq data

Note: This is a detailed Intro to this project. A brief users guide can be found at users_guide.md

Predicting true low-VAF SNVs in HPV using triplicate NGS samples and machine learning

GATK WGS workflow

Front-End for SNV Business firm

In this repository I backup the pipelines I write for the project I am involved

maftools for SNV mutation analysis, summarizes, and visualization

An adaptable method for analyzing SNVs, INDELs, and CNVs from Whole Exome Sequencing (WES) data, emphasizing germline variants.

a Nextflow SNV calling and annotation pipeline based on DKFZ-ODCF/SNVCallingWorkflow

Wrapper for pre.py from Illumina's hap.py package. It is used to preprocess VCF files in order to normalize SNVs and indels for downstream analysis.