Annotation of VCF variants with functional impact and from databases (executable+library)
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Updated
May 20, 2024 - Java
Annotation of VCF variants with functional impact and from databases (executable+library)
GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.
(Legacy) Annotate variants for import into VarFish server.
A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)
A command-line parser for VCF files designed for population genetics analyses.
GBC (short for GenoType Blocking Compressor) is a blocking compressor for genotype data, which aims at creating a unified and flexible structure-GenoType Block (GTB) for genotype data in the variant call format (VCF) files.
Useful NGS utilities for everyday use in the form of stand-alone tool.
iPat allows you to perform GWAS and GS with drags and clicks!
A Java GUI toolkit to manage Android sms/call, base64 encoder, vcf parser. Moved from my repository: https://sourceforge.net/projects/andoffline/
A standalone library for minimising alleles to VCF standard
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