CHANGELOG.md

5.22.0 (July 2023)

Features

• New setting to configure CSRF trusted origins #477

Other changes

• Django 4.2 compatibility #480
• Deprecate custom in favor of Django session store #486
• Update Pillow constant #487
• Add packaging package #478
• Organize contributor names and emails #482

5.21.0 (May 2023)

Features

• New settings to configure SameSite property for CSRF and session cookies #471

Other changes

• Django 4.0 compatibility #458
• Plugin hooks #425
• Remove legacy form #473

Bug fixes

• Users can now edit their current group #469
• Handle null dates properly #462

5.20.0 (May 2023)

Other changes

• Fix multi-file upload validation and support Django 3.2.19 security update #465
• Declare portalocker as external dependency #457

Bug fixes

• Avoid creation of empty file annotations #466

5.19.0 (March 2023)

Features

• New cacheable web API calls to render images or image regions #443 Also see notes in UPGRADING.md.

Other changes

• UI activity indicator 426
• Thumbnail zooming 411
• Indicate split view not supported for big images 412

Bug fixes

• Fix search server errors 446

5.18.0 (February 2023)

Features

• Allow the JSONSerializer to be used as a session serializer #435

Other changes

• Upgrade OMERO.web dependencies #433
• Remove outdated Python version warning #436
• Upgrade Django dependency #448

Bug fixes

• Apply inversion and quantization to proper channels #441

5.17.0 (January 2023)

Features

• Support upload of multiple file-annotations #410
• Show a spinner while loading right panel #423
• Web API access to eventContext #422
• Only show hierarchy button for single Image #413
• Improve documentation of search default settings #429

Other changes

• Mark unused Django templates as deprecated #424
• Fix usage of configured Favicon #431
• Add Python 3.10 to the testing matrix #421

5.16.0 (November 2022)

Features

• Update to a suitable version of the concurrent-log-handler #415
• Add whitenoise as a dependency #397

Minor features

• Switch to new output command in GitHub action #417

Bug fixes

• Disable submit and show spinner while editing channels #398

5.15.0 (August 2022)

Minor features

• Show Fileset ID #385
• Show table header when scrolling OMERO.table #392

Bug fixes

• Don't need ?server=1 query parameter if only 1 server #386
• Fix zoom buttons overlaying popup panels #389
• Fix activities panel display of long messages #378

5.14.1 (June 2022)

Bug fixes

• Fix Download of multiple images as png/tiff/jpeg #369
• Fix type error for omero.web.wsgi_threads configuration #372. Thanks to Michael Barrett
• Update conda create instructions in the README #374

5.14.0 (March 2022)

Documentation

• Add instructions on how to update OMERO.web plugins to Django 3.2.x (#363)

5.14.0.rc1 (March 2022)

Features

• Update to Django 3.2.x (#356)
• Install Django-cors-headers by default (#359)

Documentation

• Fix build year (#360)

5.13.0 (February 2022)

Features

• Handle multiple OMERO.tables on Image or Well containers (#352)
• Show sizeT in table-view of webclient centre panel (#329)
• Improve OMERO.table display, including a link to table as JSON (#343)
• OMERO.table DatasetColumn links to Dataset (#355)

Bug fixes

• Fix non-owned data being shown in user's data usage stats (#331)
• Fix default-group dropdown chooser in User Settings (#344)
• Handle commas in OMERO.table download as CSV (#342)
• Fix link in setting documentation string (#345)
• Fix keep-alive response content-type (#347)
• Fix "Remove all filters" for Key-Value pairs (#349)

5.12.1 (December 2021)

Documentation

• Fix redirected link to Referrer Policy (#345)

5.12.0 (November 2021)

New features

• Add option to hide "Forgot password" on login page (#313)
• Add URL endpoint to return OMERO.table query as a bitmask (#308)

Bug fixes

• Rendering settings Save-To-All includes Z and T indices (#328)
• Fix purging of Activities backlog (#325)

5.11.0 (October 2021)

• Security vulnerability fixes for 2021-SV3

5.11.0.rc1 (September 2021)

New features

• Plate layout improvements and configuration. See PR for details (#270)
• Configure custom favicon (#311)
• OMERO.table Shapes link to OMERO.iviewer (#310)
• URL /webgateway/table/FILE_ID/query supports col_names filter (#305)
• Improve OMERO.table download usability (#300)
• Configure default user and group for search (#297)
• Add /shape/ID endpoint to JSON API (#291)

Bug fixes

• Fix Shift-click to multi-select Wells (#296)
• Handle parent not found on POST webclient/api/links (#294)
• Display time-stamps in local time (#303)
• Public login button uses configured login page (#312)

Dependencies Updates

• Upgrade Underscore to 1.13.1 (#317)
• Upgrade jquery to 3.5.1, jquery.chosen to 1.8.7, jquery.form to 4.3.0, jquery.ui to 1.12.1, jstree 3.3.10 (#180)

5.9.2 (May 2021)

Bug fixes

• Fix invalid Z/T values in webclient render_image URL (#272)
• Active group switch handles invalid group (#273)
• Fix delete of user's photo (#274)
• Don't log missing script params as Error (#275)
• Handle ?show=object-id in invalid group (#276)
• OMERO.table query case insensitive (#277)
• Fix changes that cause bugs in OMERO.mapr (#282)
• Fix User Settings page when in 'All Members' context (#285)

New features

• Add metadata support to webgateway table endpoint (#283)

5.9.1 (March 2021)

Bug fixes

• Fix regression introduced in 5.9.0 (#278)

5.9.0 (March 2021)

New features

• Webclient UI supports Change Owner (#149)
• Filtering by Key-Value pairs supports autocomplete (#250)
• Support URLs as output from scripts (#233)]
• Improved install info in README (#239)]
• Migrate CI to use GitHub actions (#240)]
• Improve performance of OMERO.table loading (#243)
• OMERO.table ROI column links to ROI in OMERO.iviewer (#264)
• Disable placeholder URL popup on tree (#257)
• Add an option to set SESSION_COOKIE_PATH ([#271]#271). Thanks to Andrey Yudin

Bug fixes

• Fix Open_with handling of callbacks in right panel (#232)

• Fix /webgateway/dataset/ID/children/ URL (Thanks to Johannes Dewender) (#245)

• Remove broken 'Create Shares' dialog (#265)

• Fix API ?childCount=true when zero objects found (#249)

• Fix partial loading of annotations (#256)

• Fix ignored limit in webgateway/table endpoint (#268)

• Security vulnerability fixes for 2021-SV1, 2021-SV2

5.8.1 (September 2020)

Bug fixes

• Restore Python 3.5 compatibility (#228)

Other updates

• Add more details to README for release process (#220)
• Run tox in travis instead of Docker (#219)
• Run black autoformatter, add pre-commit hook (#218)

5.8.0 (September 2020)

• webclient:

  • Disable large zip file creation for data download (#197)
  • Fix 'Move to Group' when data owner not in origin group (#212)
  • History results page supports browse to data (#206)
  • Fix shortening of Companion file names (#198)
  • Fix pagination in history page and omero_table (#203)
  • Link ownership matches child owner (#199)
  • Improve download of OMERO.table as csv performance (#192)
  • Fix display of disk usage for very small percentages (#211)

• API changes:

  • @login_required(doConnectionCleanup=False) will close connection unless streaming (#191)
  • Return 404 for webgateway/imgData/ID if image not found (#209)

• Other:

  • Handle missing config for 'scripts to ignore' (#195)
  • Cap pytest-xdist to avoid psutil Travis failures (#201)

5.7.1 (July 2020)

• webgateway

  • Always marshal tile metadata on presence of pyramid (#193)

5.7.0 (July 2020)

• webclient:

  • Preserve whitespace and linebreaks in Comments (#150)
  • Improve filtering Images by numerical Key-Value pairs (#147)
  • Fix editing of 'Shares' in webclient (#162)
  • Fix error when user logged-out and public user configured (#154)
  • No longer ignore the default thumbnail size from the configuration (#165)
  • Fix moving data in webclient tree in Python 3.5 (#170)
  • Handle no 'callback' in request.session (#186)

• API changes:

  • Add ROI support to paths_to_object (#159)
  • Add Shape support to paths_to_object (#178)
  • Add JSON API support for Experimenters and Groups (#148)

• Other:

  • Fix render_roi_thumbnail for unset Z/T index (#157)
  • omero-web now requires omero-py 5.7.0
  • Add doc for APPLICATION_SERVER_HOST to settings (#177)
  • Set sign_tags to True by default in .bumpversion.cfg (#176)
  • Fix new flake8 warnings (#174)
  • Add omero-web-docker to release process instructions (#156)

5.6.3 (March 2020)

• omero.web.root_application: allow "/" to be overridden (#123)
• Close sessions where user is anonymous but is_valid_public_url is false (#151)

5.6.2 (February 2020)

• Fix shape_thumbnail using integer division (#137)
• Use chosen plugin for script UI values (#135)
• Rating post only (#132)
• Fix feedback url encode (#131)
• Script GUI file upload (#128)
• Script upload (#126)
• Fix webadmin search firefox (#125)
• Delete check parent links (#124)
• Map ann parent ID (#119)
• Confine projections to no more than 256MiB of raw data (#115)
• Fix color picker hex input box (#114)
• Fix and expand "open with" plugin support (#113)
• Table download (#3)

5.6.1 (January 2020)

• Quick fix of the show downloads regex (#109)

5.6.0 (January 2020)

• Remove support for Python 2 (#103)
• Remove requirement files (#107)
• Use BytesIO for default Thumbnail (#104)
• omero-web requires OMERODIR (#100)
• Ignore OMERO_HOME in settings.py (#98)
• Better exception handling of custom settings (#94)
• Add support for extra NGINX server configuration (#90)
• Fix ROI maks and thumbnails (#92)
• Fix script result failures (#87)
• Fix download of multiple images in a zip (#76)
• Fix race condition while closing tables (#25)
• Fix omero_ext.path import (#77)
• Add omero.web.nginx_server_extra_config property (#80)
• Use cached config.xml in omero.webgateway.getClientSettings (#83)
• Fix dialogs for thumbnail figure and split-view figure scripts (#73)
• Loosen version checks to support 5.5 with 5.6 (#32)

API changes

• OMERO.web now fails to start when <app>.urls fails to import (#79)
• OMERO.web uses Django 1.11, upgraded from Django 1.8.
• omeroweb.http renamed to omeroweb.httprsp to avoid import name clashes with Django http.
• URLs must be referenced by name not path.to.view.method (previously some webgateway URLS lacked a name). For example, instead of {% url 'webgateway.views.render_image' image_id theZ theT %}, use {% url 'webgateway_render_image' image_id theZ theT %}.

5.5.dev2 (August 2019)

• Improve README
• Add omeroweb.version
• Move templates to omeroweb/
• Bump to omero-py 5.5.1.dev1
• Extract code from ome/openmicroscopy
• Make minimal changes for a functioning python setup.py (#1)