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petersaj / AP_histology Public

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Andy Peters edited this page May 21, 2026 · 1 revision

Menu items:

Images
Preprocessing
Atlas
Annotation
View
Export

Saved file information

Major change log

Wiki pages Pages 13

Home
After processing: utility functions
analysis functions
Contents
Installation
Major change log
Menu: Annotation
Menu: Atlas
Menu: Export
Menu: Images
Menu: Preprocessing
Menu: View
Saved file

Installation

Menu items:

Images
- Load images
- Set channel properties
Preprocessing
Atlas
- Choose histology atlas slices
- Align atlas slices to histology
  - Automatic
  - Manual
Annotation
View
- Aligned atlas
- Annotations
Export
- Vector images
- IBL probe coordinates

Analysis functions

Saved file information

Major change log

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