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analysis functions

Andy Peters edited this page Jul 30, 2026 · 4 revisions

Currently in progress: functions to analyze processed histology data

Volumetric plots

ap_histology.histology_volume = histology_volume(histology_path)

Return 3D volume of histology aligned to the CCF atlas

Can be used to show histology aligned to atlas in slices:

image

Can be used to show 3D volumetric histology:

image

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