Installation

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Andy Peters edited this page Jun 3, 2026 · 1 revision

Installation steps:

download the Allen CCF mouse atlas download here *
Clone this AP_histology repository
Clone the The npy-matlab repository (used to load the CCF)
Add the above folderes (CCF, AP_histology, npy-matlab) to the Matlab path

*(note on where these CCF files came from: they are a slightly re-formatted version of the original atlas, which has been processed with this script)