🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
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Updated
Nov 12, 2020 - Shell
Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
machine learning for genomic variants
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
Biopython Jupyter Notebook tutorial to characterize a small genome
Platform for integrating genomic analysis with Jupyter Notebooks.
Examples using Clustergrammer2 to explore high-dimensional datasets.
A Julia package to view macromolecular structures in the REPL, in a Jupyter notebook/JupyterLab or in Pluto
Gene Set Enrichment Analysis and Over Representation Analysis analysis using R
Repository of Jupyter Notebooks created by the Bio2Byte group
Notebooks demonstrating the usage of PyBEL and PyBEL Tools
Final year project experimenting with clustering and topological data analysis of scRNA-seq data using Python and R across two Jupyter notebooks
BioJava examples in Jupyter Notebooks
📓 Minimal cheatsheet for functions in the phyloseq R package
Biological data-science Jupyter notebooks designed for biodatascience101.github.io
A lightweight introduction to NextFlow, a workflow description language and engine for (mainly) bioinformatics workflows. Leverages notebooks for easy teaching.
Different tasks from the field of data science applied on typical bioinformatic data. Mainly used packages are numpy and scipy and the code is organized in jupyter notebooks.
Jupyter notebook to analyize, transform, and predict intracranial hemorrhaging from CT scan images using a neural network.
LocusZoom in Jupyter notebooks
Notebooks and examples for DeepVariant on Spark project.
Notebooks for exercise and reference