A full spaCy pipeline and models for scientific/biomedical documents.
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Updated
Mar 30, 2024 - Python
A full spaCy pipeline and models for scientific/biomedical documents.
Visual Med-Alpaca is an open-source, multi-modal foundation model designed specifically for the biomedical domain, built on the LLaMa-7B.
🧫 A curated list of resources relevant to doing Biomedical Information Extraction (including BioNLP)
Towards Generalist Biomedical AI
[ICLR 2024] Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models
For scientific volumetric data visualization in Blender.
A unifying framework for biomedical research knowledge graphs
SleepEEGNet: Automated Sleep Stage Scoring with Sequence to Sequence Deep Learning Approach
BioGrakn Knowledge Graph
[CVPR 2023 (Highlight)] Offical implementation of the paper "RepMode: Learning to Re-parameterize Diverse Experts for Subcellular Structure Prediction".
(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"
SCIRun is a Problem Solving Environment, for modeling, simulation and visualization of scientific problems. This is version 5, the upgraded version of SCIRun v4.
Full abstract relation extraction from biological texts with bi-affine relation attention networks
Workshop (6 hours): Deep learning in R using Keras. Building & training deep nets, image classification, transfer learning, text analysis, visualization
MedType: Improving Medical Entity Linking with Semantic Type Prediction
Recognize bio-medical entities from a text corpus
Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
Named Entity Recognition with Small Strongly Labeled and Large Weakly Labeled Data
TypeDB Bio: Biomedical Knowledge Graph
Weakly supervised medical named entity classification
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