Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.

CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.

A Quantum Computing and Machine Learning Model that accelerates the Drug Research and Development process

Explore biomolecular pathways in Reactome from the command-line or a Python script

This project is done for the Biomedicine, Biotechnology and Public Healthcare department of the University of Cádiz. They idea is to automatize the processing of the microscopic images of their experiments related to angiogenesis.

genomics, biochemistry, biotechnology, cell biology, biophysics, ecology

A Python molecular biology CAD tool with a dead-simple user interface

I developed Machine Learning Software with multiple models that predict and classify AID362 biology lab data. Accuracy values are 99% and above, and F1, Recall and Precision scores are average (average of 3) 78.33%. The purpose of this study is to prove that we can establish an artificial intelligence (machine learning) system in health. With my…

Biotech with biopython

High-Performance Automatic Differentiation for Python

FLYCOP (FLexible sYnthetic Consortium OPtimization)

Deep Learning Template for bacterial image classification in Keras.

The egaia-core repository serves as the foundational framework for Project EGaia, encompassing essential algorithms, data models, and tools for ecological restoration initiatives.

Estimation of extracellular fluxes and growth rate

In the realm of EKG/ECG analysis, deep learning models have made significant strides. However, the pursuit of efficiency and accuracy persists. The proposed Mamba Biometric EKG Analysis Technology (MambaBEAT) project aims to utilize the Mamba model, a promising sequence modeling architecture, to further advance EKG analysis.

The ecobio-redemiatech-core repository serves as the foundational codebase for the EcoBio Redemiatech initiative. It includes essential algorithms, genetic engineering protocols, and synthetic biology tools designed for the development and optimization of genetically engineered microorganisms aimed at environmental remediation.

Image acquisition routine for the Scanning Lab at the Allen Institute for Brain Science

EcoMedAgriSynth Integrating AI, gene editing, and synthetic biology to revolutionize medicine, agriculture, and ecology with novel, adaptive life forms.

A library for the analysis of toehold switch riboregulators created by the iGEM team City of London UK 2021.

My PhD dissertation