Personal Cancer Genome Reporter (PCGR)

A collection of small-sample, high-dimensional microarray data sets to assess machine-learning algorithms and models.

Provide R access to the NCI Genomic Data Commons portal.

Cancer Predisposition Sequencing Reporter (CPSR)

Explore the cancer relevance of your gene list

An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app

Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq and Spatial Transcriptomics data.

Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer

R package to work with ctDNA sequencing data

Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours

High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

♋ 🆓 A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis

four class intro to R: basic syntax, data manipulation, data viz

A collection of tumour microenvironment single-cell RNA sequencing datasets for use in R and other pipelines.

cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer

An interactive graphical illustration of genetic associations and their biological context

Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors

Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four

This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.