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contigs

Here are 8 public repositories matching this topic...

Gabaldonlab / redundans

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

python bioinformatics pipeline genomics assembly docker-image polymorphic gap closing fasta scaffolding assembled-contigs genome-assembly paired-end contigs heterozygous mate-pairs

Updated Dec 15, 2023
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tobiasrausch / wally

Wally: Visualization of aligned sequencing reads and contigs

visualization genomics mapping assembly sequencing alignment plotting contigs sequencing-data

Updated Sep 20, 2024
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morispi / CONSENT

Scalable long read self-correction and assembly polishing with multiple sequence alignment

assembly ngs consensus correction long self msa reads contigs long-reads multiple-sequence-alignment polishing self-correction

Updated Feb 6, 2024
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fg6 / forACT

Pipeline to prepare alignments for visualization with ACT (goo.gl/1T28jX) and for locating possible inter-chromosomal re-arrengments/misjoints

Updated May 24, 2020
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fg6 / seq_factotum

A package for fast genomic sequences manipulation or interrogation

python fast gzip genomics cpp scaffold python-script fasta fastq dna-sequences sequences contigs seq-factotum calculate-stats print-fasta fq2fa

Updated May 16, 2021
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AntoineHo / COCOA

Coverage Of COntigs Alignment

coverage bioinformatics genome assembly visualisation sam bam contigs

Updated Dec 4, 2018
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bochen0909 / hsds-upcxx

hierarchical clustering of DNA sequence using upcxx

binning dna-sequences reads hierarchical-clustering contigs

Updated Sep 13, 2022
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tmaklin / unmulti

Split a multifasta file into many fasta files containing a single sequence, or extract a list of sequences/contigs. Supports compressed input and output files.

c-plus-plus fasta contigs bioinformatics-tool multifasta

Updated Oct 2, 2023
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