G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.

Find and visualize rearrangements in DNA sequences

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

This bartender version could handle arbitrary length of barcode

toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files

A simple yet powerful sequence clustering tool.

This project implements substring search and sequence alignment algorithms for molecular sequences analysis. It includes the Rabin-Karp algorithm for substring search and the Needleman-Wunsch algorithm for sequence alignment. Developed in C++17, the code follows Google Style and includes a Makefile for building and testing the program.

High performance tools for analyzing coronavirus genome

An algorithm for finding SNPs of a long read compared to a reference genome

Multiple Objective Optimization work for optimizing aptamer binding to new targets done in collaboration with Chris Knight and Josh Knowles

Approximate pattern matching with Counting Filter on q-grams using SSE instructions (CF2)

Archival Compression for hiGh-Throughput sequeNcing data

Looper is an ultrafast DNA tandem repeat identification tool which works on basic arithmetic rules.

Proof Of Concept for simple Base-2 binary to Base-4 DNA-code representation conversion

Basic seed-and-extend DNA sequence read aligner

Segmenting DNA sequence into ‘words’,https://arxiv.org/pdf/1202.2518.pdf

BME3160 Bioinformatics Lecture examples in C++ and Perl

my solution on Rosalind

MONKEY is a set of programs designed to search alignments of non-coding DNA sequence for matches to matrices representing the sequence specificity of transcription factors

MPI version of Sparc