toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
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Updated
May 24, 2024 - C++
toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
Translation amino acid sequence to DNA sequence.
Find and visualize rearrangements in DNA sequences
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
This bartender version could handle arbitrary length of barcode
Challenges of the Advanced Algorithms and Parallel Computing course
A simple yet powerful sequence clustering tool.
An algorithm for finding SNPs of a long read compared to a reference genome
Segmenting DNA sequence into ‘words’,https://arxiv.org/pdf/1202.2518.pdf
This project implements substring search and sequence alignment algorithms for molecular sequences analysis. It includes the Rabin-Karp algorithm for substring search and the Needleman-Wunsch algorithm for sequence alignment. Developed in C++17, the code follows Google Style and includes a Makefile for building and testing the program.
BME3160 Bioinformatics Lecture examples in C++ and Perl
G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.
Approximate pattern matching with Counting Filter on q-grams using SSE instructions (CF2)
hierarchical clustering of DNA sequence using upcxx
A project to sequence the RNA from actual error prone reads from a PCR process and then to analyze the sequenced protein sequence
A package for fast genomic sequences manipulation or interrogation
this CLI finds the repeated STRs in a given DNA sequence
Looper is an ultrafast DNA tandem repeat identification tool which works on basic arithmetic rules.
Proof Of Concept for simple Base-2 binary to Base-4 DNA-code representation conversion
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