Reciprocal BLAST analysis pipeline with Snakemake and Django

Sample code for cross-species analysis of MYC-driven transgenic zebrafish cancer model

EDA of virus orthologous groups (VOGs) from VOGDB and eggNOG

Dynamic core orthologs compilation tool

A snakemake workflow for the OrthoEvol python package.

Algorithm to infer clusters of isoorthologous transcripts using gene-level homology relationships and a Reciprocal Best Hits approach

A stand-alone tool for evaluating simple statistics of orthologs

Tree-based orthology inference with functionality for reducing contamination

A shell script that uses diamond to compute the reciprocal best hits between two proteomes in a rush.

Trace intervals between genomes using a synteny map

scripts to process, join, split, or add new proteins to a supermatrix alignment using hmms

Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.

Feature-aware Directed OrtholoG search

Use Thor's Axe to cut exons into their evolutionary building blocks ⚡

Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.

a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees

Protein orthologous group assignment with deep learning

A high performance tool to identify orthologs and paralogs across genomes.

a broadly applicable tool for automated gene identification and retrieval

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵