A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly
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Updated
Apr 2, 2021 - Python
A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
a broadly applicable tool for automated gene identification and retrieval
FastOMA is a scalable software package to infer orthology relationship.
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
Workflow for identifying and classifying homologous gene/protein sequences
a python package for automated generation of phylogenetic trees from genbank files
Feature-aware Directed OrtholoG search
Tree-based orthology inference with functionality for reducing contamination
A stand-alone tool for evaluating simple statistics of orthologs
A Bio2BEL package for the terminology from FlyBase (http://flybase.org/)
A Bio2BEL package for converting the Mouse Genome Informatics Database (MGI) to BEL
A Bio2BEL package for converting Entrez and HomoloGene to BEL
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