An analysis and visualization platform for 'omics data
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Updated
Sep 20, 2024 - Python
An analysis and visualization platform for 'omics data
An open-source toolkit for large-scale genomic analysis
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
Tools to work with variant call format files
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.
VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format
PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
Causal Mixture Model for GWAS summary statistics
deep learning prediction of geographic location from individual genome sequences
feature-based deep learning for the identification of selective sweeps
the hierfstat package
A library for working with phylogenetic and population genetic data.
strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. Each included application is specialized for querying and displaying unique aspects of linkage disequilibrium.
Pinpoints the mutation favored by selection
LDlinkR
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