Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
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Updated
Oct 12, 2023 - Python
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
A Python API for the RCSB Protein Data Bank (PDB)
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences
The Proteomics Experimental Design file format: Standard for experimental design annotation
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
A deep learning toolkit for mass spectrometry
DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
Deep (Transfer) Learning for Peptide Retention Time Prediction
Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
Fast and flexible semi-supervised learning for peptide detection in Python
A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
A Comet-based, best practices proteomics pipeline.
pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning
A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
PyProphet: Semi-supervised learning and scoring of OpenSWATH results.
pyQms, generalized, fast and accurate mass spectrometry data quantification
National Microbiome Data Collaborative (NMDC) unified data model
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