RNA sequencing analysis software
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Updated
May 14, 2024 - Python
RNA sequencing analysis software
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.
Project Manager for NGS data analysis
Long RNA-seq analysis workflow
SmartRNASeqCaller is a post-processing pipeline to improve germline variant calling from RNA-Seq data
Code, documentation, and tutorial for the DGD model trained on bulk RNA-Seq data.
A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.
A toolkit for navigating and analyzing gene expression datasets
Quantifying splice junctions coverage from data released by STAR and mapping it to genome positions.
An introduction to NGS sequencing, including an overview of methods, quality control checks, preprocessing, and basic manipulation and mapping of the data.
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