Convert between AnnData and SingleCellExperiment

rpy2 extension package to faciliate handling of R6 objects

Share Apache Arrow datasets between Python and R.

A complete python interface to Racmacs via rpy2

Use R snippets as python functions. Manage R dependencies separately.

Mapping of the R package Matrix for rpy2

Code and writings for my internship project at the Transcriptomic Bioinformatics research group at University Medical Center Groningen.

Running rpy2 in Docker containers

Repository containing Jupyter Notebooks for most of the blog posts on my blog. For example, there are data visualization, data manipulation, and data analysis code examples in the Notebooks

Algorithm in python to determine how many people had stroke by age using linear regression

Python Channel Attribution (pychattr) - A Python implementation of the excellent R ChannelAttribution library

PROFILE RNA-seq binarization technique.

Graphical user interface allows easy access to the multiscale model-free idealization methods in the R-package clampSeg (https://cran.r-project.org/package=clampSeg). It supports the model-free segmentation methods JSMURF (https://ieeexplore.ieee.org/document/6655999), JULES (https://ieeexplore.ieee.org/document/8374882) and HILDE (https://arxiv…

A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.

Correction pm2.5

This repository contains all codes necessary to reproduce figures and results reported in Stein, Barbosa et al. (Nature Communications, 2020) from the raw data acquired in human behavioral experiments (data included in the repository), and from the relevant model simulations.

Advanced scanpy environment with R support (rpy2)

COVID 19 state wise + India + International prediction with data visualization and live curve prediction

Instant Data Report using R packages 'DataExplorer' in Python