A repository for setting up a RNAseq workflow

Analysis Pipeline for Single Cell ATAC-seq

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

A collection of scripts and notes related to genomics and bioinformatics

Differential abundance (DA) and correlation analyses for microbial absolute abundance data

R package to work with ctDNA sequencing data

The is mostly a wrapper tool using phyloseq and microbiome R packages.

deepStats: a stastitical toolbox for deeptools and genomic signals

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

1000 Genomes Project Metadata R Package

The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, clusters reads and produces a consensus sequence for each cluster after multiple sequence alignment.

An R package for estimating library complexity

El genoma pequeño - analysis workflow for "the little genome." This repository holds a computational workflow to analyze the mitochondrial genome.

Engineered Peptide Barcodes for In-Depth Analyses of Binding Protein Ensembles - replication code

Datasets and analysis results released with the REVOLVER package for Cancer Evolution.

R-package to analyse data from the immuno-detection by sequencing (ID-seq) technology.

De novo SNV analysis pipeline

Orthogonal Oligo Design for Fluorescence In Situ Hybridization (a.k.a. OOD-FISH)

A workflow for eTAM-seq data processing.

Annotation and Analysis of Deep Sequencing Variants from CirSeq