Sampler, Sequencer, Multi-engine synth and effects - in a box! [WIP]

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

SPAdes Genome Assembler

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads

SortMeRNA: next-generation sequence filtering and alignment tool

UGENE is free open-source cross-platform bioinformatics software

Genomics Extension for SQLite

BAM Statistics, Feature Counting and Annotation

Get assembly statistics from FASTA and FASTQ files

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.

Wally: Visualization of aligned sequencing reads and contigs

Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

Software for predicting library complexity and genome coverage in high-throughput sequencing.

AStarix: Fast and Optimal Sequence-to-Graph Aligner

Segmented HAPlotype Estimation and Imputation Tool

A versatile compressor of third generation sequencing reads.

Maximum likelihood demultiplexing

gargammel is an ancient DNA simulator

Fast and accurate sequence demultiplexing