Finds SNP sites from a multi-FASTA alignment file
FASTQ compression
Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
parallelized blat with multi-threads support
Generate unique KMERs for every contig in a FASTA file
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
Please switch to https://github.com/OpenGene/defastq
Finding Maximal Exact Matches (MEMs) using a Sampled LCP Array
A tool to extract ATGC/Indel read counts at user specific loci from BAM files
Software for monitoring metagenomes using nanopore sequencing reads
My goal is to see how the choice of a reference genome affects the artic pipelines accuracy.
This code tries to determine the next number in a sequence (for non-mathematicians).
Splice-aware Tool for Alignment of Pyrosequencing Reads
SARUMAN: Using GPU programming for short read mapping
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