Amplicon sequencing analysis workflow using DADA2 and QIIME2

Quickly search, compare, and analyze genomic and metagenomic data sets.

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

Accurate metagenomic profiling && Fast large-scale sequence/genome searching

TAXnomic Profile Aggregation and STAndardisation

A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.

Parallelised and automated construction of metagenomic classifier databases of different tools

mSWEEP High-resolution sweep metagenomics using fast probabilistic inference

Fast and space-efficient taxonomic classification of long reads

Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets

Metabarcoding analysis pipeline, using DADA2 and qiime2

Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes

A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG

Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform specie level taxonomic assignments and functional analysis.