Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
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Updated
Jun 14, 2024 - Python
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
🦠📇 Genomes to report pipeline - for bacteria and archaea
A nextflow pipeline for performing bacterial RNA-Seq data analysis.
Build a partitioned pangenome graph from microbial genomes
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
This repo serves as a guide for the BYU Image Segmentation group. We are attempting to identify structures in images created by Electron cryotomography.
BSR-Based Allele Calling Algorithm
A library to get information on organisms and UniProt identifiers. This includes growth temperature, growth ph, pfam domains, taxonomic lineage.
Data processing scripts for analysis of targeted metagenomics sequencing data. Intended for use with multiplexed Illumina short-read data generated after enrichment.
Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.
Neural Net Bacteria - Creating bacterial colonies that will learn to play Pong, Go, DOOM, and encode/decode signals
This is the repository for the CTCB project
A simple pipeline for bacterial assembly and quality control
Accurate, resource-frugal and deterministic DNA sequence classifier.
Software to predict the occurence of programmed ribosomal frameshifting in bacterial, phage, and viral genomes
Project aimed at programming an individual based model (cellular automaton approach) for modeling bacterial biofilms and interactions within them.
Pan-genome wide association studies
PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
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