Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
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Updated
May 31, 2024 - Python
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
Scripts to download genomes from the NCBI FTP servers
Chainer Chemistry: A Library for Deep Learning in Biology and Chemistry
A PyTorch and TorchDrug based deep learning library for drug pair scoring. (KDD 2022)
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
Project for the Bio X AI Hackathon. All about resurrecting old abandonware repos, and reducing the effort to get them up and running again.
Library for Digital Pathology Image Processing
Comparative Genomics Toolkit 3
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
A Python Library for Conway's Game of Life
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
my solutions to problems from Rosalind.
Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)
Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.
Race and ethnicity Imputation from Disease history with Deep LEarning
Highly customizable, ambiguity-aware dotplots for visual sequence analyses
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