An implementation of Gavrikov's et al. detonation cell size model in Cantera

An agent-based model of flow-mediated endothelial cell migration in a simple bifurcated vessel network. Published in PLoS Comp Biol (Feb 2021).

📊✨ A next-level spreadsheet editor with ML integration, supporting real-time graphs and formulas.

Advanced Microscopy Imaging Used in Medical Research

A library that uses snakemake to run a morphodynamics analysis on images of cells or nuclei..

SeeVIS is a (S)egmentation-fr(ee) (VIS)ualization pipeline for time-lapse image data. It comprises three steps: 1. preprocessing, 2. feature extraction, and 3. an extended version of the space time cube with three novel color mappings adapted to cell colony growth.

Provides syntax checking and debugging for Cello.

Built upon Conway's Game of Life, referencing the Utopia Experiment, and studying the butterfly effect, the project simulates and predicts non-living phenomena. It explores significant outcomes of minor changes and employs cellular automata, complex network models, and machine learning to provide new perspectives on future societal development.

Python scripts related to the At7 sequencing project

Puts objects into cells / columns of a Pandas Dataframe

CYCASP is a methodology for investigating and understanding (C)olon(Y) growth and (C)ell (A)ttributes at the population level. It couples (SP)atiotemporal changes by relying on two novel data abstractions and a modular algorithm.

Stupid simple cell extractor from peripheral blood smears 🦀

Biologically detailed neural network simulations and analysis API

Segmenting Cells in Fluorescent Microscopy

Tool for distributing cell/zonal attributes among contained features.

Data for the paper titled "Advancing instance segmentation and WBC classification in peripheral blood smear through domain adaptation: A study on PBC and the novel RV-PBS datasets" published on Elsevier's Expert Systems With Applications (ESWA) journal.

Segments cells into smaller cells. Useful for redefining geometry for cell based shutdown dose rate simulations.

grid-engine is a tool for generating and manipulating 2d landscapes.