Official git repository for Biopython (originally converted from CVS)
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Updated
May 30, 2024 - Python
Official git repository for Biopython (originally converted from CVS)
Data intensive science for everyone.
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Understand DNA structure and how machine learning can be used to work with DNA sequence data.
tools for genetic genealogy and the analysis of consumer DNA test results
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates
tools for reading, writing, merging, and remapping SNPs
A package for designing compact and comprehensive capture probe sets.
Predicting Future Influenza Virus Sequences with Machine Learning
Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.
nucleic acid folding
Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets
Python package to analyze DNA methylation data
Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or transcription factor responsive elements with manual sequence (IUPAC) or JASPAR API.
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