metagenomics
Here are 26 public repositories matching this topic...
Versatile open-source tool for microbiome analysis
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Jun 5, 2024 - C++
mGEMS Genomic epidemiology with mixed samples
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Jun 4, 2024 - C++
mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
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May 30, 2024 - C++
gargammel is an ancient DNA simulator
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May 29, 2024 - C++
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
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May 24, 2024 - C++
Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!
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May 12, 2024 - C++
Fast sequence vectorization for metagenomics analysis. Converts input sequences into k-mer coverage vectors, fast! Read more detail in our paperhttps://doi.org/10.1093/bioinformatics/btaa441
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May 12, 2024 - C++
Ultra-fast and memory-efficient (meta-)genome assembler
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Apr 30, 2024 - C++
Bonsai: Fast, flexible taxonomic analysis and classification
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Apr 9, 2024 - C++
Accurate taxonomic classification and abundance profiling using locality-sensitive hashing.
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Apr 1, 2024 - C++
Fast and space-efficient taxonomic classification of long reads
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Mar 22, 2024 - C++
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
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Mar 11, 2024 - C++
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
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Jan 18, 2024 - C++
LAMBDA – the Local Aligner for Massive Biological DatA
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Jan 9, 2024 - C++
KOMB is a tool for fast identification of unitigs of interest in metagenomes. KOMB introduces the concept of a Hybrid Unitig Graph (an extension to compacted de Bruijn graphs) and relies on k-core and K-truss decomposition algorithms.
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Sep 28, 2023 - C++
fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing
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Mar 7, 2023 - C++
Fast and accurate genomic distances using HyperLogLog
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Jan 19, 2023 - C++
QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture
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Sep 22, 2022 - C++
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