forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research
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Updated
Jul 16, 2024 - Java
forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research
Bayesian Evolutionary Analysis Sampling Trees
UFCG: Universal Fungal Core Genes
Local clock model using relaxed and strict clocks
Bayesian Evolutionary Analysis by Sampling Trees
Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences
A java package which implements a quartet based method named QFM-FI to estimate phylogenetic tree from a set of quartets.
Source code for TreeBASE web application and database
A feature rich and easy to use phylogenetic tree editor
Galaxy pipelines as plugin for IRIDA intergration
A Java library for event-based reading and writing of different phylogenetic file formats through a common interface
Automatic Detection of Positively Selected Sites
ALignment Transformation EnviRonment
Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.
Greedy Strict Consensus Merger Project: containing the algorithmic part (gscm-lib) and the comandline tool (gscm-cli))
This curation tool allows curators to make precise assertions as to when functions were gained and lost during evolution and record the evidence (e.g. experimentally supported GO annotations and phylogenetic information including orthology) for those assertions.
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