🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
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Updated
May 29, 2024 - C++
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
Fast and accurate gene fusion detection from RNA-Seq data
Fast, efficient RNA-Seq metrics for quality control and process optimization
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
✂️ Deep learning-based splice site predictor that improves spliced alignments
Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)
Big data Regression for predicting DNase I hypersensitivity
Fast in-silico normalization algorithm for NGS data
GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation
Mapping-free software for fishing relevant reads in an RNA-Seq sample
A tool for de novo clustering of long transcriptomic reads
A sensitive and fast tool for circular RNA detection from RNA-Seq data
K-mer indexing and querying in RNA-Seq data
rnabridge-align is an efficient tool to bridge paired-end RNA-seq reads
An assembler for circular RNAs
Assembler for multiple RNA-seq samples
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