Workshop • Intro to Bioinformatics using NGS data • 5 days

A collection of Galaxy-related training material

A course on genomics and bioinformatics from WU

Bioconductor cheat sheet

ExpoSeq is a pipeline to process and analyze in various visualizations ngs data from phage display campaigns

Template R code for bioinformatics analysis pipeline of transcriptomic Illumina datasets

A book that discusses topics and contains tutorials relevant to population genomics

Behavioral and Transcriptomic Analyses of mecp2 Function in Zebrafish

Análisis genómicos y transcriptómicos con plataforma NGS

SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.

BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium

Isocomp provides tools to compare any number of transcriptome assemblies (GTF + fasta) from long read RNAseq

CHARGE Consortium: collaboration for mapping targets from 1000G GWAS on coronary artery calcification (CAC) with Maryam Kavousi, Maxime Bos, Clint L. Miller, and Pat Peyser.

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

Pipelines in genomics

qSVA adapted for 2 brain regions as part of the BrainSeq Phase II project

Analysis template for analysing Illumina RNAseq data.