Cleaning HTS disk

cd /Voulmes/HTS/5exomeTove for i in ls ./;do tar -cvzf $i.tar.gz $i ; done

don't work because it creates a hidden folder in the corresponding folder

like in folder1 a .tar.gz !

new command!

for i in ls ./;do tar -cvzf ${i%/}.tar.gz ${i%/} ; done

Summary

• 06Mai2014

  • tar the analysis filer in data1, I don't know from where it comes from.....
  • Rerun post analysis perl script on the data1.
  • Move old Analysis to data1
    • cd /Volumes/data1.odin/yvan/Project_Diag-excap22-2014-03-24/
    • perl /Volumes/data.odin/diagnosticBundle/script/amg/variantcalling/pipeline/pipeline_current/postProcess.pl
    • cd /Volumes/Analysis/Exome/
    • rsync -zva --remove-source-files Project_Diag-excap* /data1/yvan/

• 08Mai2014

  • Move old Analysis to data1, and compress Analysis folder.
    • cd /Volumes/data1.odin/yvan/
    • tar -cvzf Analysis.tar.gz Analysis
    • `rsync -zva --remove-source-files Project_Diag-excap* /data1/yvan/
    • rm -rf Analysis
      • rm: Analysis/Cardio_analysis_01.17.2012: Permission denied
      • rm: Analysis/Cardio_analysis41-49_15.08.2012: Permission denied
      • rm: Analysis: Directory not empty
    • sudo rm -rf Analysis
      • rm: Analysis/Cardio_analysis_01.17.2012: Permission denied
      • rm: Analysis/Cardio_analysis41-49_15.08.2012: Permission denied
      • rm: Analysis: Directory not empty
    • leave them