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Comments

• 31 Mars 2014

  Meeting

• 1 April 2014

  • Finish summary Smash validation data for NA19240
  • Useful link left.subtree.org/2012/04/13/counting-the-number-of-reads-in-a-bam-file/

• 2 April 2014

  • Starting validation for corrupted_NA12878
  • Extracting exon from validate files, methodology
    • samtools view -b -L uscs_all_exons.soretd+-20.bed file.bam > file_exons+-20.bam
    • First start with NA19240

• 3 April 2014

  • Start and fixing pair end informations on Samples on macus87
  • Check the Validate results for NA19240+-20.bam, Does it need to be fixed.
  • Update wiki

• 4 April 2014