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Rewrite fingerprinting script

yvancouver edited this page Mar 20, 2014 · 3 revisions

again ....

now

python MergeResults.py -vcf snp.raw.snpFingerPrintingTest.vcf -defi snpQC.V1.tab

It should be

python MergeResults.py -ID 13000641231

Algorithm:

the first script MergeResults get an sampleID and the current directory.

Ying

  1. runGroupPipeline.pl condor/Project/groupProfile.txt

    In the groupProfile.txt, every line contains sampleID condor/profileFile.txt

    in profileFile.txt

     runName=131009_7001448_0224_BC2G61ACXX
     project=Project_Diag-excap17-2013-09-18Redo
     SampleID=Sample_Diag-excap17-1000-KIT-AI50bv5
     captureKit=a5
    
  2. first script calls variantCallingPipeline.pl

    This is completely outdated!

    Need to rewrite this article

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