excap28

|Sample| start novoalign/picard | novoalign/picard | variant started | variant stopped | fingerprinting | delivered | |---|---|---|---|---|---| | Sample_Diag-excap28-13000291602-Bindevev-v01-KIT-Av5 | Sample_Diag-excap28-13000291602-Bindevev-v01-KIT-Av5.log | OK | 12/09/2014 10:36 | ?? | OK | | Sample_Diag-excap28-14000552101-PCD-v01-KIT-Av5 | Sample_Diag-excap28-14000552101-PCD-v01-KIT-Av5.log | OK | Tue Sep 16 18:57:00 CEST 2014 | Wed Sep 17 06:09:33 CEST 2014 | Failed tests: 16 | | Sample_Diag-excap28-14000634401-EEogPU-v01-KIT-Av5 | Sample_Diag-excap28-14000634401-EEogPU-v01-KIT-Av | OK | Tue Sep 16 02:47:22 CEST 2014 | ERRORS | | Sample_Diag-excap28-14000159800-VaBindevev-v01-KIT-Av5 | Sample_Diag-excap28-14000159800-VaBindevev-v01-KIT-Av5.log | OK | Mon Sep 15 23:11:23 CEST 2014 | Tue Sep 16 12:42:57 CEST 2014 | Taq undet:3 OK | | Sample_Diag-excap28-14000573702-EEogPU-v01-KIT-Av5 | Sample_Diag-excap28-14000573702-EEogPU-v01-KIT-Av5 | OK | Tue Sep 16 08:05:34 CEST 2014 | Tue Sep 16 18:57:00 CEST 2014 | Taq undet: 1 OK | | Sample_Diag-excap28-14000635400-EEogPU-v01-KIT-Av5 | Sample_Diag-excap28-14000635400-EEogPU-v01-KIT-Av5.log | OK | Mon Sep 15 14:02:07 CEST 2014 | Tue Sep 16 02:47:22 CEST 2014| OK | | Sample_Diag-excap28-14000513000-Jeune-v01-KIT-Av5 | Sample_Diag-excap28-14000513000-Jeune-v01-KIT-Av5.log | OK | Mon Sep 15 13:54:14 CEST 2014 | Tue Sep 16 02:02:44 CEST 2014| OK | Sample_Diag-excap28-14000585001-EEogPU-v01-KIT-Av5 | Sample_Diag-excap28-14000585001-EEogPU-v01-KIT-Av5.log | OK | Mon Sep 15 13:26:35 CEST 2014 | Tue Sep 16 08:05:34 CEST 2014| OK | | Sample_Diag-excap28-14000520100-Bindevev-v01-KIT-Av5 | Sample_Diag-excap28-14000520100-Bindevev-v01-KIT-Av5.log | RERUN | Wed Sep 17 11:44:18 CEST 2014 | Thu Sep 18 00:23:04 CEST 2014 | OK | | Sample_Diag-excap28-14000585301-EEogPU-v01-KIT-Av5 | Sample_Diag-excap28-14000585301-EEogPU-v01-KIT-Av5.log | RERUN | Wed Sep 17 11:49:19 CEST 2014 | Thu Sep 18 00:53:47 CEST 2014| OK | | Sample_Diag-excap28-14000606602-EEogPU-v01-KIT-Av5 | Sample_Diag-excap28-14000606602-EEogPU-v01-KIT-Av5.log | OK | 12/09/2014 12:10 | OK | | Sample_Diag-excap28-14000520401-Bindevev-v01-KIT-Av5 | Sample_Diag-excap28-14000520401-Bindevev-v01-KIT-Av5.log | OK | Tue Sep 16 02:02:44 CEST 2014 | Tue Sep 16 15:24:50 CEST 2014 | Taq undet:3 OK | | Sample_Diag-excap28-14000617401-EEogPU-v01-KIT-Av5 | Sample_Diag-excap28-14000617401-EEogPU-v01-KIT-Av5.log | OK | Tue Sep 16 11:11:48 CEST 2014 | Tue Sep 16 21:41:36 CEST 2014 | OK| | Sample_Diag-excap28-14000360801-EEogPU-v01-KIT-Av5 | Sample_Diag-excap28-14000360801-EEogPU-v01-KIT-Av5.log | OK | Tue Sep 16 12:42:57 CEST 2014 | Wed Sep 17 01:25:28 CEST 2014| Failed tests:14| | Sample_Diag-excap28-14000489700-Bindevev-v01-KIT-Av5 | Sample_Diag-excap28-14000489700-Bindevev-v01-KIT-Av5 | OK | | | | Sample_Diag-excap28-13000337201-EEogPU-v01-KIT-Av5 | Sample_Diag-excap28-13000337201-EEogPU-v01-KIT-Av5.log | OK | | | OK | | | | | Sample_Diag-excap28-NA12878-EEogPU-v01-KIT-Av5 | Not to be Run | | Sample_Diag-excap28-13001005002-EEogPU-v01-KIT-Av5 | failed run| | Sample_Diag-excap28-14000520100dup-Bindevev-v01-KIT-Av5 | failed run| | Sample_Diag-excap28-13000291602dup-Bindevev-v01-KIT-Av5 | failed run | | Sample_Diag-excap28-13001005002dup-EEogPU-v01-KIT-Av5 | failed run|

Move Failed run to failed run folder:

01/10/14 13:43:49 mkdir /data/diag/diagInternal/samples/NotToBeRunOrFailedRun
01/10/14 13:43:55 ls -d /data/diag/diagInternal/samples/NotToBeRunOrFailedRun/
01/10/14 13:43:57 ls -d /data/diag/diagInternal/samples/NotToBeRunOrFailedRun
01/10/14 13:44:15 chgrp ous-diag /data/diag/diagInternal/samples/NotToBeRunOrFailedRun
01/10/14 13:44:23 chmod 770 /data/diag/diagInternal/samples/NotToBeRunOrFailedRun
01/10/14 13:44:26 ls -ld /data/diag/diagInternal/samples/NotToBeRunOrFailedRun
01/10/14 13:44:44 mv /data/diag/diagInternal/samples/140822_D00132_0086_AC4073ANXX/Unaligned_lane123456/140822_D00132.A.Project_Diag-excap28-2014-08-21/Sample_Diag-excap28-NA12878-EEogPU-v01-KIT-Av5/ /data/diag/diagInternal/samples/NotToBeRunOrFailedRun/
01/10/14 13:46:24 mv /data/diag/diagInternal/samples/140822_D00132_0086_AC4073ANXX/Unaligned_lane123456/140822_D00132.A.Project_Diag-excap28-2014-08-21/Sample_Diag-excap28-13001005002-EEogPU-v01-KIT-Av5/ /data/diag/diagInternal/samples/NotToBeRunOrFailedRun/
01/10/14 13:49:15 mv /data/diag/diagInternal/samples/140822_D00132_0086_AC4073ANXX/Unaligned_lane123456/140822_D00132.A.Project_Diag-excap28-2014-08-21/Sample_Diag-excap28-14000520100dup-Bindevev-v01-KIT-Av5/ /data/diag/diagInternal/samples/NotToBeRunOrFailedRun/
01/10/14 13:56:28 mv /data/diag/diagInternal/samples/140822_D00132_0086_AC4073ANXX/Unaligned_lane123456/140822_D00132.A.Project_Diag-excap28-2014-08-21/Sample_Diag-excap28-13000291602dup-Bindevev-v01-KIT-Av5/ /data/diag/diagInternal/samples/NotToBeRunOrFailedRun/
01/10/14 13:57:57 mv /data/diag/diagInternal/samples/140822_D00132_0086_AC4073ANXX/Unaligned_lane123456/140822_D00132.A.Project_Diag-excap28-2014-08-21/Sample_Diag-excap28-13001005002dup-EEogPU-v01-KIT-Av5/ /data/diag/diagInternal/samples/NotToBeRunOrFailedRun/